Atelier de l'Inserm 265
mercredi 01 décembre 2021 à 15 h 30
 

PROGRAMME

 
 
 
 

Les nouveaux enjeux du séquençage sur cellule unique : 

intégration multi-omique dans l'espace et le temps 

 

1-3 Decembre 2021 à Bordeaux, France

 
 

Mercredi 1 décembre 2021

 
15:30 - 16:00
Reception of participants
16:00 - 16:15
 Welcome and presentation by the organizers
SESSION I
Ultra-high throughput single-cell sequencing
16:15 - 17:00

Single-cell sequencing of the nervous system
Sten Linnarsson (Karolinska Institutet, Stockholm, Sweden)

17:00 - 17:15

Flash presentation

17:00 - 17:30
Coffee break and Poster session
 17:30 - 18:15
Ultra-high throughput single-cell sequencing with combinatorial indexing
Cole Trapnell (University of Washington, Seattle, USA)  
 18:15 - 19:00
Single-cell cancer multi-omics
Orit Rozenblatt-Rosen (Broad Institute, Cambridge, USA)
19:30
Dinner
 
 
 

Jeudi 2 décembre 2021

 
 
06:30 - 08:30
Breakfast

SESSION II

Single-cell multi-omics analyses
 08:30 - 09:15 Multi-omics data integration
Stein Aerts (VIB, Leuven, Belgium)
09:15 - 10:00

Single-cell ChIP-seq and epigenomics
Céline Vallot (Institut Curie, Paris, France)

 10:00 - 10:30
Coffee break and Poster session
10:30 - 11:15
Long-read simple-cell sequencing
Rainer Waldmann (IPMC, Sophia Antipolis, France)
 11:15 - 12:00
Deep learning approaches for single-cell data integration
Nir Yosef (UC Berkeley, Berkeley, USA)
 12:00 - 14:00
Lunch
SESSION III
Spatial transcriptomics
 14:00 - 14:45 Spatial Transcriptomics
Marlon Stoeckius (10x Genomics, Stockholm, Sweden)
14:45 - 15:30 Sequencing physically interacting cells
Ido Amit (Weizmann Institute of Science, Rehovot, Israel)
15:30 - 16:00 Coffee break and Poster session
16:00 - 16:45 Spatial Transcriptomics
Joakim Lundeberg (SciLifeLab, Stockholm, Sweden
)
16:45 - 17:30 Spatial integration of single-cell multiomics
Jean Fan (Johns Hopkins University, Baltimore, USA)
17:30 - 18:15
Round Table 1 : New frontiers in spatial transcriptomics
Session III speakers, moderators : Pascal Barbry
 19:30 - 20:15
 Cocktail
 20:15 Dinner
   
 

Vendredi 3 décembre 2021

   
 06:30 - 08:30 Breakfast
SESSION IV
Time-resolved transcriptomics
 08:30 - 09:15 RNA velocity in single cells
Gioele La Manno (EPFL, Lausanne, Switzerland)
09:15 - 10:00 Lineage tracing
Alexander Van Oudenaarden (Oncode Institute, Utrecht, The Netherlands)
 10:00 - 10:30  Coffee break and Poster session
10:30 - 11:15
Lineage tracing
Samantha Morris (Washington University, Saint-Louis, USA)
11:15 - 12:00
Round Table 2 : New frontiers in time-resolved single cell omics
Session IV speakers, moderator : Pierre Milpied
 12:00 - 14:00 Lunch
14:00 Departure