PROGRAMME
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Les nouveaux enjeux du séquençage sur cellule unique :
intégration multi-omique dans l'espace et le temps
1-3 Decembre 2021 à Bordeaux, France
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15:30 - 16:00
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Reception of participants
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16:00 - 16:15
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Welcome and presentation by the organizers
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SESSION I
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Ultra-high throughput single-cell sequencing
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16:15 - 17:00
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Single-cell sequencing of the nervous system
Sten Linnarsson (Karolinska Institutet, Stockholm, Sweden)
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17:00 - 17:15
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17:00 - 17:30
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Coffee break and Poster session
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| 17:30 - 18:15 |
Ultra-high throughput single-cell sequencing with combinatorial indexing
Cole Trapnell (University of Washington, Seattle, USA)
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| 18:15 - 19:00 |
Single-cell cancer multi-omics
Orit Rozenblatt-Rosen (Broad Institute, Cambridge, USA)
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| 19:30 |
Dinner
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| 06:30 - 08:30 |
Breakfast
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SESSION II
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Single-cell multi-omics analyses
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| 08:30 - 09:15 |
Computational strategies to decipher gene regulatory programs from single-cell multi omics data
Stein Aerts (VIB, Leuven, Belgium)
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09:15 - 10:00
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Single-cell ChIP-seq and epigenomics
Céline Vallot (Institut Curie, Paris, France)
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10:00 - 10:30
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Coffee break and Poster session |
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10:30 - 11:15
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Long-read simple-cell sequencing
Rainer Waldmann (IPMC, Sophia Antipolis, France) |
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11:15 - 12:00
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Deep learning approaches for single-cell data integration
Malte Lücken (Helmholtz Zentrum München, Germany)
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12:00 - 14:00
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Lunch |
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SESSION III
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Spatial transcriptomics |
| 14:00 - 14:45 |
Spatially resolved multi-omic characterization of the tumor microenvironment in FFPE tissues
Marlon Stoeckius (10x Genomics, Stockholm, Sweden)
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| 14:45 - 15:30 |
The power of ONE: Immunology in the age of single cell genomics
Ido Amit (Weizmann Institute of Science, Rehovot, Israel)
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| 15:30 - 16:00 |
Coffee break and Poster session |
| 16:00 - 16:45 |
The spatial and multimodal landscape of gene expression and genome integrity in tumors
Joakim Lundeberg (SciLifeLab, Stockholm, Sweden) |
| 16:45 - 17:30 |
Spatial integration of single-cell multiomics
Roser Vento-Tormo (Wellcome Sanger Institute, Cambridge, United Kingdom)
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| 17:30 - 18:15 |
Round Table 1 : New frontiers in spatial transcriptomics
Session III speakers, moderators : Pascal Barbry
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19:30 - 20:15
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Cocktail
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| 20:15 |
Dinner |
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| 06:30 - 08:30 |
Breakfast |
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SESSION IV
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Time-resolved transcriptomics
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| 08:30 - 09:15 |
Intrinsically-consistent manifold-based RNA velocity estimation
Gioele La Manno (EPFL, Lausanne, Switzerland)
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| 09:15 - 10:00 |
Lineage tracing
Alexander Van Oudenaarden (Oncode Institute, Utrecht, The Netherlands) |
| 10:00 - 10:30 |
Coffee break and Poster session |
| 10:30 - 11:15 |
CellOracle: Dissecting cell identity via network inference and in silico gene perturbation
Samantha Morris (Washington University, Saint-Louis, USA)
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| 11:15 - 12:00 |
Round Table 2 : New frontiers in time-resolved single cell omics
Session IV speakers, moderator : Pierre Milpied
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| 12:00 - 14:00 |
Lunch |
| 14:00 |
Departure |
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