PROGRAMME
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Transparisation optique : échantillons, imagerie 3D et analyse
24-26 Novembre 2021 à Lyon
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Mercredi 24 Novembre 2021
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15:30 - 16:00
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Reception of participants
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16:00 - 16:15
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Welcome and presentation by the organizers
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SESSION I
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Introduction to bilogical sample optical clearing
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16:15 - 17:15
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Introduction
Alain CHEDOTAL (Institut de la Vision, Paris, France)
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17:15 - 17:45
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Coffee break
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| 17:45 - 18:45 |
Optics in biological matter
Eirini PAPAGIAKOUMOU & Ruth SIMS (Institut de la Vision, Paris, France)
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| 19:30 |
Dinner
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Jeudi 25 Novembre 2021
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| 06:30 - 08:30 |
Breakfast
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SESSION II
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Tissue clearing techniques |
| 08:30 - 09:15 |
Hydrophobic tissue clearing
Ali ERTURK (Helmholtz Zentrum München, Neuherberg, Germany)
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09:15 - 10:00
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Hydrophilic tissue clearing
Hiroki UEDA (RIKEN, Osaka, Japan)
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10:00 - 10:30
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Coffee break |
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10:30 - 11:15
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Hydrophilic tissue clearing
Viviana GRADINARU (California Institute of Technology, Pasadena, USA) |
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11:15 - 12:00
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Mapping transparent brains
Nicolas RENIER (Paris Brain Institute, Paris, France)
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12:00 - 14:00
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Lunch |
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SESSION III
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Imaging cleared samples |
| 14:00 - 14:45 |
Introduction to Light Sheet imaging and biological application of organoid imaging
Corinne LORENZO (RESTORE, Toulouse, France)
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| 14:45 - 15:45 |
Imaging large cleared samples with light-sheet microscopy: from challenges to solutions
Fabian VOIGT (University of Zurich, Switzerland)
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| 15:45 - 16:15 |
Coffee break |
| 16:15 - 17:15 |
Adaptive optics for confocal, multi-photon and light sheet imaging
Pablo LOZA (ICFO, Castelldefels, Spain) |
| 17:15 - 18:15 |
ROUND TABLE: Tissue clearing: the tips and hints through a core facility approach
Morgane BELLE (Institut de la Vision, Paris, France), Susanne BOLTE (Institut de Biologie Paris-
Seine, France), Orestis FAKLARIS (MRI-CRBM, Montpellier, France) |
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18:15 - 19:00
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Poster Session
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19:30 - 20:15
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Cocktail
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| 20:15 |
Dinner |
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Vendredi 26 Novembre 2021
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| 06:30 - 08:30 |
Breakfast |
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SESSION IV
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Data analysis and handling
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| 08:30 - 09:15 |
Data handling
Perrine PAUL-GILLOTEAUX (SFR Santé François Bonamy, Nantes, France)
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| 09:15 - 10:00 |
3D visualization of large datasets
Stephan PREIBISCH (Janelia Research Campus, Ashburn, USA) |
| 10:00 - 10:30 |
Coffee break |
| 10:30 - 11:15 |
Data analysis and machine learning
Anna KRESHUK (EMBL Heidelberg, Germany)
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| 11:15 - 12:00 |
Data registration and atlassing
Arnim JENETT (TEFOR Paris-Saclay, Gif-sur-Yvette, France)
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| 12:00 - 14:00 |
Lunch |
| 14:00 |
Departure |
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